BioMCP
genomoncology/biomcp@0.9.0MCP server (and CLI) reaching ~30 biomedical sources, including ClinVar clinical variant significance and ClinicalTrials.gov trial matching, through one command grammar.
Overview
A real, actively maintained (628 GitHub stars at review time, pushed the same day as this review) MCP server, also distributed as the biomcp-cli CLI binary, that reaches roughly 30 trusted biomedical sources through one command grammar: PubMed/PubTator3, ClinVar, ClinicalTrials.gov, OncoKB, Reactome, and more, confirmed directly from the project's own README and server.json. ClinVar and ClinicalTrials.gov are the two sources this registry's admission bar cares about most directly: clinical variant significance classification and clinical-trial matching are concrete genomics and health-research workflows, not vague health-adjacent branding.
MIT licence confirmed by direct fetch of the repository's own root LICENSE file (Copyright 2025 Ian Maurer), not from GitHub's derived metadata alone.
Recorded as a marginal fit, plainly: BioMCP wraps public genomics and clinical databases directly rather than implementing or wrapping a named GA4GH API specification, and it carries no GA4GH-aligned (or any) access-control layer, since it queries open public APIs. It clears this registry's admission bar on the weaker of the two relevance tests, a real genomics/health data source exposed as MCP tools, with a concrete rather than vague relevance fact, but not the stronger named-GA4GH-standard or GA4GH-aligned-access-control test.
Details
- Licence
- MIT
- Version
- 0.9.0
- Category
- Other GA4GH-standard or genomics/health data source
- Homepage
- https://biomcp.org/
- Repository
- https://github.com/genomoncology/biomcp
- Maintainers
- Susheel Varma (@susheel, GA4GH AI Workstream / Sage Bionetworks)
- Keywords
- clinvarclinicaltrialspubmedoncokbbiomedicalmcp-server
- GA4GH standards
- other
Publisher
- Published by
- GenomOncology (GitHub organisation) profile ↗
- Upstream name
- biomcp
- Upstream version
0.9.0(GitHub release)- Version date
Safety classification
No safety classification has been submitted for this entry.
Server manifest
- Server name
- io.github.genomoncology/biomcp
- Server version
- 0.9.0
- Implements
- other
Install
Add this to your Claude Desktop MCP server configuration.
{
"mcpServers": {
"io.github.genomoncology/biomcp": {
"command": "uvx",
"args": [
"biomcp-cli@0.9.0",
"serve"
]
}
}
}Add this to your Claude Code MCP server configuration.
{
"mcpServers": {
"io.github.genomoncology/biomcp": {
"command": "uvx",
"args": [
"biomcp-cli@0.9.0",
"serve"
]
}
}
}Add this to your Cursor MCP server configuration.
{
"mcpServers": {
"io.github.genomoncology/biomcp": {
"command": "uvx",
"args": [
"biomcp-cli@0.9.0",
"serve"
]
}
}
}Add this to your VS Code MCP server configuration.
{
"servers": {
"io.github.genomoncology/biomcp": {
"command": "uvx",
"args": [
"biomcp-cli@0.9.0",
"serve"
]
}
}
}Add this to your Windsurf MCP server configuration.
{
"mcpServers": {
"io.github.genomoncology/biomcp": {
"command": "uvx",
"args": [
"biomcp-cli@0.9.0",
"serve"
]
}
}
}Add this to your Kiro MCP server configuration.
{
"mcpServers": {
"io.github.genomoncology/biomcp": {
"command": "uvx",
"args": [
"biomcp-cli@0.9.0",
"serve"
]
}
}
}Add this to your opencode MCP server configuration.
{
"mcp": {
"io.github.genomoncology/biomcp": {
"type": "local",
"command": [
"uvx",
"biomcp-cli@0.9.0",
"serve"
],
"enabled": true
}
}
}Provenance
- Created
- Updated
- Last verified