GA4GH AI Registry

MCP Servers

Model Context Protocol servers, each publishable to the official MCP registry unmodified.

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24 of 24 entries shown

Category
GA4GH standard
Keyword
Certification tier
GA4GH Genomic AI Safety Evaluation (GASE)
GA4GH Agent Runtime Risk Level

  • BioMCP

    MCP server (and CLI) reaching ~30 biomedical sources, including ClinVar clinical variant significance and ClinicalTrials.gov trial matching, through one command grammar.

    UnsignedOther GA4GH-standard or genomics/health data source

  • cBioPortal Navigator

    Official cBioPortal MCP server resolving natural-language cancer genomics queries into structured cBioPortal URLs across studies, genes, and molecular profiles.

    UnsignedOther GA4GH-standard or genomics/health data source

  • GA4GH MCP Server (DNAstack)

    Exposes 57 tools across the GA4GH Registry, WES, TES, TRS, Beacon v2, DRS, htsget, refget, and Data Connect as one MCP server.

    UnsignedOther GA4GH-standard or genomics/health data source

  • GA4GH Beacon v2 Server

    GA4GH Beacon v2 client: query a Beacon endpoint's g_variants search for variant/dataset existence

    UnsignedBeacon

  • GA4GH Crypt4GH Inspector

    GA4GH Crypt4GH header inspector: structurally validates a file header's magic bytes, version, and packet accounting

    UnsignedCrypt4GH

  • GA4GH Data Connect Server

    GA4GH Data Connect Cordis plugin: search a configured Data Connect endpoint as a model-facing tool and a standalone stdio MCP server

    UnsignedData Connect

  • GA4GH Data Repository Service (DRS) Server

    GA4GH Data Repository Service (DRS) Cordis plugin: fetch a DrsObject by id from a configured DRS endpoint as a model-facing tool and a standalone stdio MCP server

    UnsignedData Repository Service (DRS)

  • GA4GH Genomic Knowledge Standards (GKS) Server

    Meta-plugin for the GA4GH Genomic Knowledge Standards (GKS) suite: mounts the bundled ga4gh-vrs plugin and reports which GKS-family standards it currently bundles

    UnsignedGenomic Knowledge Standards (GKS)

  • GA4GH htsget Server

    Requests GA4GH htsget tickets (byte-range URLs) and service-info documents, downloads their data blocks, from a configured htsget server, and registers the bundled ga4gh-htsget skill

    Unsignedhtsget

  • GA4GH Passport Server

    Validates GA4GH Passport visas against a configured clearinghouse and registers the bundled ga4gh-passport skill

    UnsignedPassport

  • GA4GH Pedigree Validator

    Structural validation for GA4GH pedigree documents, exposed as a Cordis plugin, a bundled skill, and a standalone MCP server

    UnsignedPedigree

  • GA4GH Phenopackets Validator

    Structural validation for GA4GH Phenopacket v2 documents, exposed as a Cordis plugin, a bundled skill, and a standalone MCP server

    UnsignedPhenopackets

  • GA4GH refget Server

    GA4GH refget v2.0 sequence-metadata lookup, exposed as a Cordis plugin, a bundled skill, and a standalone MCP server

    Unsignedrefget

  • GA4GH RNAget Server

    Browses GA4GH RNAget metadata and retrieves expression or continuous matrices through policy-enforced ticket requests and anonymous byte fetches

    UnsignedRNAget

  • GA4GH Security Suite (Passport + Crypt4GH)

    Mounts the ga4gh-passport and ga4gh-crypt4gh plugins together and reports which GA4GH security-domain standards the composition bundles

    UnsignedOther GA4GH-standard or genomics/health data source

  • GA4GH Service Info Server

    Fetches the standard GA4GH Service Info document from a configured service and registers the bundled ga4gh-service-info skill

    UnsignedService Info

  • GA4GH Service Registry Server

    Lists services registered with a configured GA4GH Service Registry and registers the bundled ga4gh-service-registry skill

    UnsignedService Registry

  • GA4GH Task Execution Service (TES) Server

    Lists tasks known to a configured GA4GH Task Execution Service (TES) server and registers the bundled ga4gh-tes skill

    UnsignedTask Execution Service (TES)

  • GA4GH Tool Registry Service (TRS) Server

    Searches a GA4GH Tool Registry Service (TRS) for registered tools and their versions, and registers the bundled ga4gh-trs skill

    UnsignedTool Registry Service (TRS)

  • GA4GH Variation Representation Specification (VRS) Server

    Normalizes a genomic variation expression against a configured GA4GH Variation Representation Specification (VRS) normalization service and registers the bundled ga4gh-vrs skill

    UnsignedVariation Representation Specification (VRS)

  • GA4GH Workflow Execution Service (WES) Server

    Lists workflow runs from a configured GA4GH Workflow Execution Service (WES) endpoint and registers the bundled ga4gh-wes skill

    UnsignedWorkflow Execution Service (WES)

  • LangCare MCP FHIR Server

    Go-based MCP server exposing FHIR R4 Patient/Observation resources against Epic, Cerner, and GCP Healthcare API, plus a CLI bridging LangChain, CrewAI, AutoGen, and smolagents.

    UnsignedOther GA4GH-standard or genomics/health data source

  • OMOP MCP Server

    MCP server from the OHNLP clinical-NLP consortium mapping free-text clinical terminology to OMOP Common Data Model concepts using LLMs.

    UnsignedOther GA4GH-standard or genomics/health data source

  • Synapse MCP Server

    Official Sage Bionetworks MCP server exposing Synapse.org datasets, provenance/lineage, and ACL auditing for cancer, neurodegenerative, and rare-disease data.

    UnsignedOther GA4GH-standard or genomics/health data source