GA4GH refget Server
susheel/ga4gh-plugins@0.1.0-rc.5GA4GH refget v2.0 sequence-metadata lookup, exposed as a Cordis plugin, a bundled skill, and a standalone MCP server
Overview
GA4GH refget v2.0 sequence-metadata lookup by checksum, as a Cordis plugin, a bundled skill, and a standalone MCP server.
Install: not published to npm or any other package registry. Clone and build the ga4gh-plugins repository, then run this package's standalone stdio MCP server with Node, using an absolute path:
git clone https://github.com/susheel/ga4gh-plugins.git
cd ga4gh-plugins && pnpm install && pnpm run build
GA4GH_REFGET_ALLOW_UNENFORCED_MCP=true GA4GH_REFGET_BASE_URL=https://your-refget-endpoint.example.org \
node /absolute/path/to/ga4gh-plugins/packages/refget/lib/bin.jsThe standalone server has no GA4GH policy enforcement point in scope and refuses to start unless GA4GH_REFGET_ALLOW_UNENFORCED_MCP=true is set. Run the Cordis plugin instead where GA4GH Passport/Visa policy enforcement is required.
Details
- Licence
- MIT
- Version
- 0.1.0-rc.5
- Category
- refget
- Homepage
- https://github.com/susheel/ga4gh-plugins/tree/main/packages/refget
- Repository
- https://github.com/susheel/ga4gh-plugins
- Maintainers
- Susheel Varma (@susheel, GA4GH AI Workstream / Sage Bionetworks)
- Keywords
- ga4ghrefgetcordis-pluginmcp-server
- GA4GH standards
- refget
Publisher
- Published by
- Susheel Varma (GitHub user) profile ↗
- Upstream name
- ga4gh-plugins
- Upstream version
0.1.0-rc.5(Git tag)- Version date
Safety classification
No safety classification has been submitted for this entry.
Server manifest
- Server name
- io.github.susheel/ga4gh-refget
- Server version
- 0.1.0-rc.5
- Implements
- refget
Install
No install snippet could be derived for this entry.
Provenance
- Created
- Updated
- Last verified