GA4GH Variation Representation Specification (VRS) Server
susheel/ga4gh-plugins@0.1.0-rc.5Normalizes a genomic variation expression against a configured GA4GH Variation Representation Specification (VRS) normalization service and registers the bundled ga4gh-vrs skill
Overview
Normalizes a genomic variation expression against a configured GA4GH VRS normalization service. Bundles the ga4gh-vrs skill.
Install: not published to npm or any other package registry. Clone and build the ga4gh-plugins repository, then run this package's standalone stdio MCP server with Node, using an absolute path:
git clone https://github.com/susheel/ga4gh-plugins.git
cd ga4gh-plugins && pnpm install && pnpm run build
GA4GH_VRS_ALLOW_UNENFORCED_MCP=true GA4GH_VRS_BASE_URL=https://your-vrs-endpoint.example.org \
node /absolute/path/to/ga4gh-plugins/packages/vrs/lib/bin.jsThe standalone server has no GA4GH policy enforcement point in scope and refuses to start unless GA4GH_VRS_ALLOW_UNENFORCED_MCP=true is set. Run the Cordis plugin instead where GA4GH Passport/Visa policy enforcement is required.
Details
- Licence
- MIT
- Version
- 0.1.0-rc.5
- Category
- Variation Representation Specification (VRS)
- Homepage
- https://github.com/susheel/ga4gh-plugins/tree/main/packages/vrs
- Repository
- https://github.com/susheel/ga4gh-plugins
- Maintainers
- Susheel Varma (@susheel, GA4GH AI Workstream / Sage Bionetworks)
- Keywords
- ga4ghvrscordis-pluginmcp-server
- GA4GH standards
- vrs
Publisher
- Published by
- Susheel Varma (GitHub user) profile ↗
- Upstream name
- ga4gh-plugins
- Upstream version
0.1.0-rc.5(Git tag)- Version date
Safety classification
No safety classification has been submitted for this entry.
Server manifest
- Server name
- io.github.susheel/ga4gh-vrs
- Server version
- 0.1.0-rc.5
- Implements
- vrs
Install
No install snippet could be derived for this entry.
Provenance
- Created
- Updated
- Last verified