BioMCP
genomoncology/biomcp@1.0.0Claude Code / Codex plugin and MCP server reaching ~30 biomedical data sources (PubMed, ClinVar, ClinicalTrials.gov, OncoKB, Reactome) via one CLI command grammar
Overview
BioMCP is a single CLI binary and MCP server (GenomOncology) exposing one command grammar over roughly thirty trusted biomedical sources -- PubMed, ClinVar, ClinicalTrials.gov, OncoKB, Reactome, cBioPortal-style study data, and more -- for genes, variants, trials, articles, drugs, diseases, pathways, and proteins. Verified directly: the repository ships both .claude-plugin/plugin.json (a minimal manifest: name, description, version, author, embedded verbatim below) and a fuller .claude-plugin/marketplace.json (the install-time definition wiring the biomcp serve stdio MCP server), matching the documented install (/plugin marketplace add genomoncology/biomcp then /plugin install biomcp@biomcp) and a separately documented Codex path (codex mcp add biomcp -- biomcp serve). ClinVar is a concrete, nameable NCBI genomics/health data source, satisfying the relevance test directly rather than by vague health branding. Terms check: the repository's root LICENSE file (fetched directly) is the MIT License, matching the license field declared in marketplace.json. No slug collision against any existing entry in this registry.
Details
- Licence
- MIT
- Version
- 1.0.0
- Category
- clinical-genomics
- Homepage
- https://biomcp.org
- Repository
- https://github.com/genomoncology/biomcp
- Maintainers
- Susheel Varma (@susheel, GA4GH AI Workstream / Sage Bionetworks)
- Keywords
- biomedicalclinvarpubmedclinical-trialsmcp-serverclaude-code-plugin
Publisher
- Published by
- GenomOncology (GitHub organisation) profile ↗
- Upstream name
- biomcp
- Upstream version
1.0.0(Manifest)
Safety classification
No safety classification has been submitted for this entry.
Install
Run in Claude Code:
/plugin marketplace add genomoncology/biomcp /plugin install biomcp@biomcp
Run in Codex:
codex mcp add biomcp -- biomcp serve
Run in Any MCP-capable harness (generic):
{
"mcpServers": {
"biomcp": {
"command": "biomcp",
"args": [
"serve"
]
}
}
}Provenance
- Created
- Updated
- Last verified