BioMCP

Overview

BioMCP is a single CLI binary and MCP server (GenomOncology) exposing one command grammar over roughly thirty trusted biomedical sources -- PubMed, ClinVar, ClinicalTrials.gov, OncoKB, Reactome, cBioPortal-style study data, and more -- for genes, variants, trials, articles, drugs, diseases, pathways, and proteins. Verified directly: the repository ships both `.claude-plugin/plugin.json` (a minimal manifest: name, description, version, author, embedded verbatim below) and a fuller `.claude-plugin/marketplace.json` (the install-time definition wiring the `biomcp serve` stdio MCP server), matching the documented install (`/plugin marketplace add genomoncology/biomcp` then `/plugin install biomcp@biomcp`) and a separately documented Codex path (`codex mcp add biomcp -- biomcp serve`). ClinVar is a concrete, nameable NCBI genomics/health data source, satisfying the relevance test directly rather than by vague health branding. Terms check: the repository's root `LICENSE` file (fetched directly) is the MIT License, matching the `license` field declared in `marketplace.json`. No slug collision against any existing entry in this registry.

Details

Licence

MIT

Version

1.0.0

Category

clinical-genomics

Homepage

https://biomcp.org

Repository

https://github.com/genomoncology/biomcp

Maintainers

Susheel Varma (@susheel, GA4GH AI Workstream / Sage Bionetworks)

Keywords

biomedicalclinvarpubmedclinical-trialsmcp-serverclaude-code-plugin

Safety classification

No safety classification has been submitted for this entry.

Install

/plugin marketplace add genomoncology/biomcp
/plugin install biomcp@biomcp

codex mcp add biomcp -- biomcp serve

{
  "mcpServers": {
    "biomcp": {
      "command": "biomcp",
      "args": [
        "serve"
      ]
    }
  }
}

Provenance

Created

2026-09-08T00:00:00.000Z

Updated

2026-09-08T00:00:00.000Z

Last verified

2026-09-08T00:00:00.000Z