ga4gh-beacon skill
Query a GA4GH Beacon v2 endpoint for genomic variants, individuals, biosamples, analyses, runs, cohorts, and datasets, follow its cross-entity links, and read its metadata and filtering vocabulary
Overview
Bundled Claude Code / MCP skill for GA4GH Beacon v2, shipped alongside the `@deepseek-ai/dsh-ga4gh-beacon` Cordis plugin and standalone MCP server in the `ga4gh-plugins` monorepo. Query a GA4GH Beacon v2 endpoint for genomic variants, individuals, biosamples, analyses, runs, cohorts, and datasets, follow its cross-entity links, and read its metadata and filtering vocabulary. Use when the user asks about GA4GH Beacon queries, variant-presence lookups against a Beacon v2 service, federated genomic discovery, or GA4GH Beacon interoperability.
Details
- Licence
- MIT
- Version
- 0.1.0-rc.5
- Category
- Other genomic or health research use case
- Homepage
- https://github.com/susheel/ga4gh-plugins/tree/main/packages/beacon
- Repository
- https://github.com/susheel/ga4gh-plugins
- Maintainers
- Susheel Varma (@susheel, GA4GH AI Workstream / Sage Bionetworks)
- Keywords
- ga4ghbeaconcordis-pluginmcp-server
- GA4GH standards
- beacon
Safety classification
No safety classification has been submitted for this entry.
Skill
- Human oversight
- recommended
- Provenance logging
- No
- Evaluation criteria
- https://github.com/susheel/ga4gh-plugins/blob/main/packages/beacon/EVALUATION-CRITERIA.md
- Source
- https://github.com/susheel/ga4gh-plugins.git (packages/beacon)
Inputs
- endpoint_url (string) — Base URL of the configured endpoint to query.
- query_parameters (object) — Standard-specific filter, search, or lookup parameters; see the skill's own tool table.
Outputs
- result (object) — Structured response from the queried endpoint, per the standard's own schema, unmodified.
Provenance
- Created
- 2026-09-04T11:00:07.662Z
- Updated
- 2026-09-04T11:00:07.662Z
- Last verified
- 2026-09-04T11:00:07.662Z