ga4gh-phenopackets skill
Qualified id
susheel/ga4gh-plugins@0.1.0-rc.5Structurally validate a GA4GH Phenopacket v2 document (a schema for sharing clinical phenotype and disease data linked to genomic findings)
Overview
Bundled Claude Code / MCP skill for GA4GH Phenopacket v2, shipped alongside the dsh-ga4gh-phenopackets Cordis plugin and standalone MCP server in the ga4gh-plugins monorepo. Structurally validate a GA4GH Phenopacket v2 document (a schema for sharing clinical phenotype and disease data linked to genomic findings). Use when the user provides a phenopacket JSON document and asks whether it is well-formed, or asks which phenotypic-data sections (phenotypic features, diseases, interpretations, measurements, biosamples, medical actions) it populates.
Details
- Licence
- MIT
- Version
- 0.1.0-rc.5
- Category
- Data curation
- Homepage
- https://github.com/susheel/ga4gh-plugins/tree/main/packages/phenopackets
- Repository
- https://github.com/susheel/ga4gh-plugins
- Maintainers
- Susheel Varma (@susheel, GA4GH AI Workstream / Sage Bionetworks)
- Keywords
- ga4ghphenopacketscordis-pluginmcp-server
- GA4GH standards
- phenopackets
Publisher
- Published by
- Susheel Varma (GitHub user) profile ↗
- Upstream name
- ga4gh-plugins
- Upstream version
0.1.0-rc.5(Git tag)- Version date
Safety classification
No safety classification has been submitted for this entry.
Skill
- Human oversight
- recommended
- Provenance logging
- No
- Evaluation criteria
- https://github.com/susheel/ga4gh-plugins/blob/main/packages/phenopackets/EVALUATION-CRITERIA.md
- Source
- https://github.com/susheel/ga4gh-plugins.git (packages/phenopackets)
Inputs
- document (string) — The document or file content to validate structurally against the standard.
Outputs
- validation_result (object) — Pass/fail outcome; on failure, the specific rule violated.
Provenance
- Created
- Updated
- Last verified