ga4gh-refget skill
Fetch checksum, length, and alias metadata, bounded raw sequence bytes, and sequence-collection facts from a GA4GH refget-conformant server
Overview
Bundled Claude Code / MCP skill for GA4GH refget, shipped alongside the `@deepseek-ai/dsh-ga4gh-refget` Cordis plugin and standalone MCP server in the `ga4gh-plugins` monorepo. Fetch checksum, length, and alias metadata, bounded raw sequence bytes, and sequence-collection facts from a GA4GH refget-conformant server. Use when the user asks to look up or verify a sequence identifier (a ga4gh:SQ.* checksum or accession) against a refget server, asks about a sequence's GA4GH (SQ.*) or MD5 checksum, length, or known aliases, wants a bounded byte range of raw sequence content, or asks about a genome assembly / sequence collection by its seqcol digest.
Details
- Licence
- MIT
- Version
- 0.1.0-rc.5
- Category
- Other genomic or health research use case
- Homepage
- https://github.com/susheel/ga4gh-plugins/tree/main/packages/refget
- Repository
- https://github.com/susheel/ga4gh-plugins
- Maintainers
- Susheel Varma (@susheel, GA4GH AI Workstream / Sage Bionetworks)
- Keywords
- ga4ghrefgetcordis-pluginmcp-server
- GA4GH standards
- refget
Safety classification
No safety classification has been submitted for this entry.
Skill
- Human oversight
- recommended
- Provenance logging
- No
- Evaluation criteria
- https://github.com/susheel/ga4gh-plugins/blob/main/packages/refget/EVALUATION-CRITERIA.md
- Source
- https://github.com/susheel/ga4gh-plugins.git (packages/refget)
Inputs
- endpoint_url (string) — Base URL of the configured endpoint to query.
- query_parameters (object) — Standard-specific filter, search, or lookup parameters; see the skill's own tool table.
Outputs
- result (object) — Structured response from the queried endpoint, per the standard's own schema, unmodified.
Provenance
- Created
- 2026-09-04T11:00:07.664Z
- Updated
- 2026-09-04T11:00:07.664Z
- Last verified
- 2026-09-04T11:00:07.664Z