GA4GH AI RegistryAI Workstream

Skills

ga4gh-refget skill

Qualified idsusheel/ga4gh-plugins@0.1.0-rc.5

Fetch checksum, length, and alias metadata, bounded raw sequence bytes, and sequence-collection facts from a GA4GH refget-conformant server

Unsigned
View upstream

Overview

Bundled Claude Code / MCP skill for GA4GH refget, shipped alongside the dsh-ga4gh-refget Cordis plugin and standalone MCP server in the ga4gh-plugins monorepo. Fetch checksum, length, and alias metadata, bounded raw sequence bytes, and sequence-collection facts from a GA4GH refget-conformant server. Use when the user asks to look up or verify a sequence identifier (a ga4gh:SQ.* checksum or accession) against a refget server, asks about a sequence's GA4GH (SQ.*) or MD5 checksum, length, or known aliases, wants a bounded byte range of raw sequence content, or asks about a genome assembly / sequence collection by its seqcol digest.

Details

Licence
MIT
Version
0.1.0-rc.5
Category
Other genomic or health research use case
Homepage
https://github.com/susheel/ga4gh-plugins/tree/main/packages/refget
Repository
https://github.com/susheel/ga4gh-plugins
Maintainers
Susheel Varma (@susheel, GA4GH AI Workstream / Sage Bionetworks)
Keywords
ga4ghrefgetcordis-pluginmcp-server
GA4GH standards
refget

Publisher

Published by
Susheel Varma (GitHub user) profile ↗
Upstream name
ga4gh-plugins
Upstream version
0.1.0-rc.5 (Git tag)
Version date

Safety classification

No safety classification has been submitted for this entry.

What the safety levels mean

Skill

Human oversight
recommended
Provenance logging
No
Evaluation criteria
https://github.com/susheel/ga4gh-plugins/blob/main/packages/refget/EVALUATION-CRITERIA.md
Source
https://github.com/susheel/ga4gh-plugins.git (packages/refget)

Inputs

  • endpoint_url (string) — Base URL of the configured endpoint to query.
  • query_parameters (object) — Standard-specific filter, search, or lookup parameters; see the skill's own tool table.

Outputs

  • result (object) — Structured response from the queried endpoint, per the standard's own schema, unmodified.

Provenance

Created
Updated
Last verified